In order to investigate the molecular taxonomy within Trypanosoma cruz
i, the ribosomal small subunit (18S) gene was amplified by polymerase
chain reaction (PCR) from a selection of 21 stocks and 3 outgroup taxa
. Amplification products were digested with 10 restriction enzymes; re
striction fragments were separated by polyacrylamide gel electrophores
is and profiles were visualized by silver staining. Upon analysis of s
uch riboprint profiles, an estimate of pairwise phenetic distance betw
een stocks of T. cruzi was calculated. Upon principal coordinate analy
sis of this data matrix, a tendency towards a bi-polar grouping of sto
cks was observed. These 2 groups were predominantly either zymodeme 1
stocks or zymodeme 2 stocks. The position of zymodeme 3 stocks remaine
d intermediate between the 2 groups but did not form a coherent group
by themselves. It would therefore appear premature to warrant division
of T. cruzi into 2 discrete taxa or subspecies until the relationship
s of further zymodeme 3 stocks are elucidated.