There are four NMC-linked complement genes, BE C2, C4A and C4B, that a
re inherited as single DNA units, known as complotypes. Extended haplo
types were initially defined by studying the distribution of complotyp
es in relation to HLA-B and HLA-DR loci in Caucasian families. In orde
r to analyze the distribution of HLA-Cw alleles in relation to extende
d haplotypes, we studied a large panel of MHC homozygous and hetero zy
gous cell lines representing previously described Caucasian derived ex
tended haplotypes and 14 patients with complete C2 deficiency. HLA all
eles were assigned using sequence-specific oligonucleotide probe hybri
dization (SSOP). Family analysis served to assign haplotypes for heter
ozygous samples. We found distinctive HLA-Cw alleles for each independ
ent extended haplotype. Their association in each instance was statist
ically significant. All patients with C2 deficiency carrying the haplo
type [HLA-B18, S042, DR2] were associated with HLA-Cw1203. These cons
erved allelic combinations may become an important tool for the study
of human evolution and may contribute to the expeditious selection of
prospective donors in clinical transplantation.