H2-M (HLA-DM in humans) resides in an acidic endosomal compartment, wh
ere it facilitates the loading of antigenic peptides into the peptide-
binding groove of class II MHC. The crystal structure of a soluble for
m of H2-M has been solved to 3.1 Angstrom resolution, revealing a hete
rodimer with structural similarities to the MHC family of proteins. In
contrast to its antigen-presenting cousins, the membrane distal alpha
helices of H2-M pack closely together, occluding most of the binding
groove except for a single large pocket near the center. The structure
of H2-M has several unique features that may play a role in its funct
ion as a molecular chaperone and peptide exchange factor.