B. Nowakowski et al., MASTER EQUATION AND MOLECULAR-DYNAMICS SIMULATIONS OF EXCITABILITY INA MODEL CHEMICAL-SYSTEM, The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, & general theory, 102(37), 1998, pp. 7250-7256
We study the influence of internal fluctuations on a simple but realis
tic model of a chemical system in an excitable regime. Numerical simul
ations of the master equation are compared with results of molecular d
ynamics simulations. We show that internal fluctuations are able to ex
cite the system, which is initially at a stable stationary state. The
dependence of escape time on the system's volume is studied. We observ
e that correlations of fluctuations in concentrations do not depend on
the volume and the results of both simulation methods are in excellen
t agreement.