QUANTITATIVE STRUCTURE ACTIVITY RELATIONSHIP FOR THE RATE OF CONVERSION OF C4-SUBSTITUTED CATECHOLS BY CATECHOL-1,2-DIOXYGENASE FROM PSEUDOMONAS-PUTIDA (ARVILLA) C1/

Citation
L. Ridder et al., QUANTITATIVE STRUCTURE ACTIVITY RELATIONSHIP FOR THE RATE OF CONVERSION OF C4-SUBSTITUTED CATECHOLS BY CATECHOL-1,2-DIOXYGENASE FROM PSEUDOMONAS-PUTIDA (ARVILLA) C1/, European journal of biochemistry, 257(1), 1998, pp. 92-100
Citations number
27
Categorie Soggetti
Biology
ISSN journal
00142956
Volume
257
Issue
1
Year of publication
1998
Pages
92 - 100
Database
ISI
SICI code
0014-2956(1998)257:1<92:QSARFT>2.0.ZU;2-S
Abstract
The influence of various C4/C5 substituents in catechol (1,2-dihydroxy benzene) derivatives on the overall rate of conversion by catechol-1.2 -dioxygenase from Pseudomonas putida (arvilla) C1 was investigated. Us ing catechol. 4-methylcatechol. 4-fluorocatechol, 4-chlorocatechol. 4- bromocatechol, 4,5-difluorocatechol and 4-chloro-5-fluorocatechol, it could be demonstrated that substituents at the C4 and/or C5 position d ecrease the rate of conversion, from 62% (4-methylcatechol) down to 0. 7% (4-chloro-5-fluorocatechol) of the activity with non-substituted ca techol, The inhibition was reversible upon addition of excess catechol for all substrates tested. This indicates that the lower activities a re neither due to irreversible inactivation of the enzyme nor to produ ct inhibition. Based on the reaction mechanism proposed in the literat ure [Que, L. & Ho, R. Y. N. (1996) Chem. Rev. 96. 2606-2624], the nucl eophilic reactivity of the catecholate was expected to be an essential characteristic for its conversion by catechol-1,2-dioxygenase. Theref ore, the fates of conversion were compared with calculated energies of the highest occupied molecular orbital (E-Homo) of the substrates. A clear quantitative relationship (R>0.97) between the In k(cai) and the calculated electronic parameter E-HOMO was obtained. This indicates t hat the rate-limiting step of the reaction cycle is dependent on the n ucleophilic reactivity of the substrate and not sterically hindered by the relatively large bromine or methyl substituents used in the prese nt study. Possible steps in the reaction mechanism determining the ove rall rate at 20 degrees C are discussed.