The initial steps of newer development involve two classes of consecut
ively acting regulatory genes. Meristem-identity genes, which act earl
y to control the initiation of flowers, are expressed throughout the i
ncipient floral primordium. Homeotic genes, which act later to specify
the identify of individual floral organs, are expressed in distinct d
omains within the flower. The link between the two classes of genes ha
s remained unknown so far. Here we show that the meristem-identity gen
e LEAN has a role in controlling homeotic genes that is separable from
its role in specifying floral fate. On the basis of our observation t
hat LEAFY activates different homeotic genes through distinct mechanis
ms, we propose a genetic framework for the control of floral patternin
g.