Improvements in fluorescence microscopy have allowed us to explore the thre
e-dimensional organization of the nucleus in ways that were impossible ten
years ago, revealing subdomains or compartments within the nucleus defined
by their enrichments of subsets of factors. Correlations have been drawn be
tween the silencing of a gene and its proximity to a heterochromatic compar
tment or to the nuclear periphery. The application of genetics and high-res
olution microscopy helps examine the creation, maintenance and impact of th
ese compartments on gene expression.