Studies designed to investigate the causative agent of equine protozoal mye
loencephalitis and its life cycle have been hampered by the marked similari
ty of Sarcocystis neurona to other Sarcocystis spp. present in the same def
initive host. Random-amplified polymorphic DNA techniques were used to ampl
ify DNA from isolates of S. neurona and Sarcocystis falcatula. DNA sequence
analysis of polymerase chain reaction (PCR) products was then used to desi
gn PCR primers to amplify specific Sarcocystis spp. DNA products. The ribos
omal RNA internal transcribed spacer was also amplified and compared betwee
n S. neurona and S. falcatula. Useful sequence heterogeneity between the 2
organisms was identified, creating potential markers to distinguish these S
arcocystis spp. These markers were used to characterize Sarcocystis isolate
s from opossum (Didelphis virginiana) feces. Our data suggest that S. neuro
na and S. falcatula can be differentiated with these markers and that multi
ple Sarcocystis spp., including S. neurona and S. falcatula, are shed by op
ossums.