The two-step mechanism of coenzyme (thiamine diphosphate, ThDP) bindin
g with two initially identical active sites of apotransketolase has be
en examined with a kinetic model. Cooperativity between sites in the p
rimary ThDP binding and in the following conformational transition has
been analyzed. The only reliable difference between sites is shown to
be the tenfold difference in the backward rate constants of the confo
rmational transition; this means that the cooperative interaction betw
een sites takes place only after termination of both steps of ThDP bin
ding in both sites.