To facilitate the histologic analysis of large numbers of 7-day-old ze
brafish (Danio rerio), a method has been developed to process them in
agarose-embedded arrays. Using thin tissue sections, the morphology of
cells and tissues can be examined microscopically to investigate a va
riety of biologic processes. Because of their small size, precise arra
ngement of the larvae is necessary to section them simultaneously. A t
echnique was designed to embed groups of zebrafish larvae in a single
plane in agarose before sectioning. Stained tissue sections of thousan
ds of larvae can be examined efficiently using this embedding method.
In addition to histologic analysis, PCR-based genotypic analysis of DN
A from individual larval sections is also possible. This technique can
be modified to accommodate any study that requires the histologic exa
mination of many pieces of tissue.