The molecular basis of regionalisation and patterning of the developin
g brain is an area of current intense interest. Members of the Otx, Pa
x-2/5/8 and Hox gene families appear to play important roles in these
processes in vertebrates, but functional divergence and genetic redund
ancy arising from gene duplication events obscures our view of the rol
es played by these genes during the evolution of vertebrate brains, De
termination of the ancestral gene copy number in chordates through mol
ecular phylogenetics, accompanied by gene expression analysis in all t
hree chordate subphyla (vertebrates, cephalochordates and urochordates
) may distinguish between ancestral and derived expression domains and
give clues to the roles played by these genes in chordate ancestors.
Application of this comparative approach indicates evolutionary homolo
gous brain regions (fore-/midbrain, isthmus/cerebellum and hindbrain)
in chordates and supports homology of the frontal eye of cephalochorda
tes to the paired eyes of vertebrates.