Analysis of the 1,042,519-base pair Chlamydia trachomatis genome revea
led unexpected features related to the complex biology of chlamydiae.
Although chlamydiae lack many biosynthetic capabilities, they retain f
unctions for performing key steps and interconversions of metabolites
obtained from their mammalian host cells. Numerous potential virulence
-associated proteins also were characterized. Several eukaryotic chrom
atin-associated domain proteins were identified, suggesting a eukaryot
ic-like mechanism for chlamydial nucleoid condensation and decondensat
ion. The phylogenetic mosaic of chlamydial genes, including a Large nu
mber of genes with phylogenetic origins from eukaryotes, implies a com
plex evolution for adaptation to obligate intracellular parasitism.