Wm. Gong et al., CRYSTAL-STRUCTURES OF ACUTOLYSIN-A, A 3-DISULFIDE HEMORRHAGIC ZINC METALLOPROTEINASE FROM THE SNAKE-VENOM OF AGKISTRODON-ACUTUS, Journal of Molecular Biology, 283(3), 1998, pp. 657-668
Acutolysin A alias AaHI, a 22 kDa hemorrhagic toxin isolated from the
snake venom of Agkistrodon acutus, is a member of the adamalysin subfa
mily of the metzincin family and is a snake venom zinc metalloproteina
se possessing only one catalytic domain. Acutolysin A was found to hav
e a high-activity and a low-activity under weakly alkaline and acidic
conditions, respectively. With the adamalysin II structure as the init
ial trial-and-error model, the crystal structures were solved to the f
inal crystallographic X-factors of 0.168 and 0.171, against the diffra
ction data of crystals grown under pH 5.0 and pH 7.5 conditions to 1.9
Angstrom and 1.95 Angstrom resolution, respectively. One zinc ion, bi
nding in the active-site, one structural calcium ion and some water mo
lecules were localized in both of the structures. The catalytic zinc i
on is coordinated in a tetrahedral manner with one catalytic water mol
ecule anchoring to an intermediate glutamic acid residue (Glu143) and
three imidazole N-epsilon 2 atoms of His142, His146 and His152 in the
highly conserved sequence H(142)E(143)XXH(146)XXGXXH(152). There are t
wo new disulfide bridges (Cys157-Cys181 and Cys159-Cys164) in acutolys
in A in addition to the highly conserved disulfide bridge Cys117-Cys19
7. The calcium ion occurs on the molecular surface. The superposition
showed that there was no significant conformational changes between th
e two structures except for a few slight changes of some flexible resi
due side-chains on the molecular surface, terminal residues and the ac
tive-site cleft. The average contact distance between the catalytic wa
ter molecule and oxygen atoms of the Glu143 carboxylate group in the w
eakly alkaline structure was also found to be closer than that in the
weakly acidic structure. By comparing the available structural informa
tion of the members of the adamalysin subfamily, it seems that, when l
owering the pH value, the polarization capability of the Glu143 carbox
ylate group to the catalytic water molecule become weaker, which might
be the structural reason why the snake venom metalloproteinases are i
nactive or have a low activity under acidic conditions. (C) 1998 Acade
mic Press.