The structure of the LAGLIDADG intron-encoded homing endonuclease I-Cr
el bound to homing site DNA has been determined. The interface is form
ed by an extended, concave beta sheet from each enzyme monomer that co
ntacts each DNA half-site, resulting in direct side-chain contacts to
18 of the 24 base pairs across the full-length homing site. The struct
ure indicates that I-Crel is optimized to its role in genetic transpos
ition by exhibiting long site-recognition while being able to cleave m
any closely related target sequences. DNA cleavage is mediated by a co
mpact pair of active sites in the I-Crel homodimer, each of which cont
ains a separate bound divalent cation.