P. Luger et al., STRUCTURE OF THE TANNIN GERANIIN BASED ON CONVENTIONAL X-RAY DATA AT 295 K AND ON SYNCHROTRON DATA AT 293 AND 120 K, Acta crystallographica. Section B, Structural science, 54, 1998, pp. 687-694
Geraniin, C41H28O27.7H(2)O, is the main tannin from Geranium thunbergi
i Sieb. et Zucc., which is one of the most popular folk medicines and
also an official antidiarrheic drug in Japan. Conventional X-ray diffr
actometer data at 295 K and synchrotron data at 293 and 120 K (at EMBL
/DESY Hamburg with a MARRESEARCH imaging plate) were measured. The str
ucture could not be determined with any of the currently distributed d
irect-methods programs, but was easily solved with DIRDIF using severa
l conformers of the hexahydroxydiphenoyl group as input fragments into
a vector-search procedure. A molecular structure was established wher
e a cyclohexenetrione moiety attached to O4 of a central glucose unit
was in a hydrated six-membered hemiacetal ring structure, as expected
from the NMR study of crystalline geraniin. Owing to the high oligocyc
lic substitution the glucopyranosyl ring is in the unusual C-1(4) conf
ormation. Refinement of the low-temperature synchrotron data allowed i
dentification of almost all the H atoms, even within the seven water m
olecules, so that a rather complex system of approximately 30 differen
t hydrogen bonds can be studied in some detail.