The mechanism of kainate receptor targeting and clustering is still un
resolved. Here, we demonstrate that members of the SAP90/PSD-95 family
colocalize and associate with kainate receptors. SAP90 and SAP102 coi
mmunoprecipitate with both KA2 and GluR6, but only SAP97 coimmunopreci
pitates with GluR6. Similar to NMDA receptors, GluR6 clustering is med
iated by the interaction of its C-terminal amino acid sequence, ETMA,
with the PDZ1 domain of SAP90. in contrast, the KA2 C-terminal region
binds to, and is clustered by, the SH3 and GK domains of SAP90. Finall
y, we show that SAP90 coexpressed with GluR6 or GluR6/KA2 receptors al
ters receptor function by reducing desensitization. These studies sugg
est that the organization and electrophysiological properties of synap
tic kainate receptors are modified by association with members of the
SAP90/PSD-95 family.