In this study we purified phagosomes of the ciliated protozoan Tetrahy
mena thermophila to analyze aspects of the maturation pathway of phago
cytotic vesicles. Phagosomes were labeled with magnetic microparticles
and then purified in high amounts with the help of a permanent magnet
. By combining a pulse-chase labeling protocol with the magnetic separ
ation procedure we were able to isolate phagosomes of defined ages, wh
ich represent distinct stages of their maturation pathway. GTP-overlay
assays showed that a set of small GTPases of the ras superfamily is a
ssociated with these phagosomes. Phagosomes isolated at different stag
es of maturation revealed a change in the pattern of the small GTPases
. Some small GTPases identified by the GTPase overlay assays could be
aligned to India ink stained protein spots in two-dimensional gels of
isolated phagosomes. The results presented here are a first step to id
entify the members of small GTPases associated with phagosomes during
their maturation pathway. Microsequencing of pooled polypeptides by ma
ss-spectrometric techniques will identify the primary structure of the
se small GTPases.