To investigate the properties and intracellular origin of autophagosom
es, a procedure for the purification and isolation of these organelles
from rat liver has been developed. Isolated hepatocytes were incubate
d with vinblastine to induce autophagosome accumulation; the cells wer
e then homogenized and treated with the cathepsin C substrate glycyl-L
-phenylalanine 2-naphthylamide to cause osmotic disruption of the lyso
somes. Nuclei were removed by differential centrifugation, and the pos
tnuclear supernatant was fractionated on a discontinuous Nycodenz dens
ity gradient. The autophagosomes, recognized by their content of autop
hagocytosed lactate dehydrogenase (LDH), could be recovered in an inte
rmediate-density fraction, free from cytosol and mitochondria. Finally
, the autophagosomes were separated from the endoplasmic reticulum and
other membranous elements by centrifugation in a Percoll colloidal de
nsity gradient, followed by flotation in iodixanol to remove the Perco
ll particles. The final autophagosome preparation represented a 24-fol
d purification of autophagocytosed LDH relative to intact cells, with
a 12% recovery. The purified autophagosomes contained sequestered cyto
plasm with a normal ultrastructure, including mitochondria, peroxisome
s and endoplasmic reticulum in the same proportions as in intact cells
. However, immunoblotting indicated a relative absence of cytoskeletal
elements (tubulin, actin and cytokeratin), which may evade autophagic
sequestration. The autophagosomes showed no enrichment in protein mar
kers typical of lysosomes (acid phosphatase, cathepsin B, lysosomal gl
ycoprotein of 120 kDa), endosomes (early-endosome-associated protein 1
, cation-independent mannose 6-phosphate receptor, asialoglycoprotein
receptor) or endoplasmic reticulum (esterase, glucose-regulated protei
n of 78 kDa, protein disulphide isomerase), suggesting that the seques
tering membranes are not derived directly from any of these organelles
, but rather represent unique organelles (phagophores).