DNA base oxidation is considered to be a key event associated with dis
ease initiation and progression in humans. Peroxyl radicals (ROO.) are
important oxidants found in cells whose ability to react with the DNA
bases has not been characterized extensively. In this paper, the prod
ucts resulting from ROO. oxidation of the DNA bases are determined by
gas chromatography/MS in comparison with authentic standards. ROO. rad
icals oxidize adenine and guanine to their 8-hydroxy derivatives, whic
h are considered biomarkers of hydroxyl radical (HO.) oxidations in ce
lls. ROO. radicals also oxidize adenine to its hydroxylamine, a previo
usly unidentified product. ROO. radicals oxidize cytosine and thymine
to the monohydroxy and dihydroxy derivatives that are formed by oxidat
ive damage in cells. Identical ROO. oxidation profiles are observed fo
r each base when exposed as deoxyribonucleosides, monohomopolymers and
base-paired dihomopolymers. These results have significance for the d
evelopment, utilization and interpretation of DNA base-derived biomark
ers of oxidative damage associated with disease initiation and propaga
tion, and support the idea that the mutagenic potential of N-oxidized
bases, when generated in cellular DNA, will require careful evaluation
Adenine hydroxylamine is proposed as a specific molecular probe for t
he activity of ROO. in cellular systems.