The genetic mapping of disease loci involves the use of patient phenot
ype and genotype data in the search for genetic markers that segregate
, or are associated with, a trait or disorder. Genetically isolated po
pulations offer many advantages for such studies. The high degree of i
nbreeding and/or founder effects in some small population isolates res
ult in an increased incidence of recessive disorders. Monogenic disord
ers are less likely to show nonallelic heterogeneity in isolated popul
ations than in more diverse populations. The use of isolated populatio
ns also reduces the complexity of polygenic disorders by reducing the
number of loci probably involved in the disorder. Finally, a variety o
f strategies can be used with particular efficacy for the mapping of d
isease genes in isolated populations.