DNA fragmentation was examined in situ in flash-frozen human postmorte
m midbrain as a marker for programmed cell death. A large series of ca
ses comprising 16 pathologically confirmed idiopathic Parkinson's dise
ase (IPD) cases, 14 control cases without brain pathology, and a group
of 6 patients with other parkinsonian movement disorders were examine
d using TdT-mediated dUTP-biotin 3' end-labeling histology. Labeling o
f neurons and glia was seen in the substantia nigra of control and IPD
cases and in other movement disorder cases. Labeled nuclei were seen
in melanized nigral neurons; apoptotic bodies were also found but were
more commonly associated with nigral glia. in the control group, labe
ling of neurons and glia was strongly associated with poor agonal stat
us, assessed by tissue pH, a marker for antemortem hypoxia. The mean t
issue pH of the control group with neuronal labeling was 6.28 (SEM .05
7), which was significantly different from that of the unlabeled group
6.55 (SEM .055). Mean tissue pH for all cases was 6.38. There was no
association of nigral neuronal labeling with poor agonal status in the
IPD cases, which showed labeling throughout the range of pH values. H
owever, extranigral labeling, seen in the mesencephalon, red nucleus,
superior colliculus, rostral pens, and periaqueductal gray matter, in
all three subject groups was associated with tissue pH values of less
than 6.3. These findings suggest that DNA fragmentation is influenced
by antemortem hypoxia and that apoptosis-like changes seen in the post
mortem nigra may parallel those seen in experimental ischemia in the a
nimal blain. The likely influence of perimortem factors on these chang
es indicates that results from postmortem studies of apoptotic cell de
ath in neurodegenerative disease should be treated with caution and un
derlines the importance of determining postmortem markers for agonal s
tatus in human brain.