Transmission of multidrug-resistant strains of Mycobacterium tuberculo
sis (MDR-TB) presents a serious problem for infection control in hospi
tals, particularly in the context of co-infection with the human immun
odeficiency virus (HIV). We report on the use of molecular genetic too
ls to allow rapid assessment of samples from patients potentially infe
cted with MDR-TB. Sputum and bronchoalveolar lavage samples were obtai
ned from two HIV-positive patients with suspected tuberculosis, who ha
d previous contact with a known MDR-TB index case, Polymerase chain re
action (PCR) was used directly on clinical samples to amplify genetic
loci associated with rifampicin resistance (rpoB), and strain-specific
polymorphisms (the direct repeat (DR) region), Drug resistance was de
termined using a commercially available kit for detection of point mut
ations in the rpoB gene (Inno-Lipa RifTB; Innogenetics, Belgium), and
confirmed by nucleotide sequencing, Strain variation was determined us
ing the spoligotyping method, based on the presence or absence of vari
able linker sequences within the DR region. In one patient, infection
with a MDR strain identical to that of a known index case was demonstr
ated, A second patient, although positive for M. tuberculosis, was fou
nd to be infected with a rifampicin-sensitive strain. Results were obt
ained within 48 h, allowing appropriate treatment to be initiated and
infection control measures to be implemented. PCR-based tests for stra
in-typing and for identification of rifampicin resistance provide impo
rtant tools for identifying patients with h MDR-TB and for rapid monit
oring of potential nosocomial spread of MDR-TB, Prompt confirmation or
exclusion of possible transmission allows early clinical intervention
to prevent future outbreaks of multidrug-resistant M. tuberculosis.