MAPPLET - A CORBA-BASED GENOME MAP VIEWER

Citation
K. Jungfer et P. Rodrigueztome, MAPPLET - A CORBA-BASED GENOME MAP VIEWER, BIOINFORMATICS, 14(8), 1998, pp. 734-738
Citations number
10
Categorie Soggetti
Computer Science Interdisciplinary Applications","Biology Miscellaneous","Computer Science Interdisciplinary Applications","Biochemical Research Methods
Journal title
ISSN journal
13674803
Volume
14
Issue
8
Year of publication
1998
Pages
734 - 738
Database
ISI
SICI code
1367-4803(1998)14:8<734:M-ACGM>2.0.ZU;2-L
Abstract
Motivation: There are a large number of genetic and physical maps, dis tributed at many sites. Each site offers different kinds of access met hods and viewers. CORBA, the defacto standard for distributed object-o riented computing, offers new opportunities to unify the view on these maps through standard interfaces. A collaboration of Infobiogen and t he EBI proposes a common IDL for maps. Results: A CORBA map viewer is presented which serves as a proof of concept for the proposed IDL. It demonstrates its usefulness in the context of map viewing and its abil ity to handle large maps with >1000 markers. The viewer gives access t o the maps of the Radiation Hybrid Database at EBI. It gives a quick o verview of several large maps side by side. The marker density at each map position is displayed and different marker types can be highlight ed.