Hox complex genes are key developmental regulators highly conserved th
roughout evolution. The encoded proteins share a 60-amino-acid DNA-bin
ding motif, the homeodomain, and function as transcription factors to
control axial patterning. An important question concerns the nature an
d function of genes acting downstream of Hox proteins. This review foc
uses on Drosophila, as little is known about this question in other or
ganisms. The noticeable progress gained in the field during the past f
ew years has significantly improved our current understanding of how H
ox genes control diversified morphogenesis. Here we summarise the stra
tegies deployed to identify Hox target genes and discuss how their fun
ction contributes to pattern formation and morphogenesis. The regulati
on of target genes is also considered with special emphasis on the mec
hanisms underlying the specificity of action of Hox proteins in the wh
ole animal.