Summation test for gap penalties and strong law of the local alignment score

Authors
Citation
Chan, Hock Peng, Summation test for gap penalties and strong law of the local alignment score, Annals of applied probability , 15(2), 2005, pp. 1492-1505
ISSN journal
10505164
Volume
15
Issue
2
Year of publication
2005
Pages
1492 - 1505
Database
ACNP
SICI code
Abstract
A summation test is proposed to determine admissible types of gap penalties for logarithmic growth of the local alignment score. We also define a converging sequence of log moment generating functions that provide the constants associated with the large deviation rate and logarithmic strong law of the local alignment score and the asymptotic number of matches in the optimal local alignment.