Histamine H1 receptor expression has been reported to change in disord
ers such as allergic rhinitis, autoimmune myocarditis, rheumatoid arth
ritis and atherosclerosis. Here we report the isolation and characteri
zation of genomic clones containing the 5' flanking (regulatory) regio
n of the human histamine H1 receptor gene. An intron of approx. 5.8 kb
was identified in the 5' untranslated region, which suggests that an
entire subfamily of G-protein-coupled receptors may contain an intron
immediately upstream of the start codon. The transcription initiation
site was mapped by 5' rapid amplification of cDNA ends to a region 6.2
kb upstream of the start codon. Immediately upstream of the transcrip
tion start site a fragment of 1.85 kb was identified that showed promo
ter activity when placed upstream of a luciferase reporter gene and tr
ansiently transfected into cells expressing the histamine HI receptor.
The promoter sequence shares a number of characteristics with the pro
moter sequences of other G-protein-coupled receptor encoding genes, in
cluding binding sites for several transcription factors, and the absen
ce of TATA and CAAT sequences at the appropriate locations. The promot
er sequence described here differs from that reported previously [Fuku
i, Fujimoto, Mizuguchi, Sakamoto, Horio, Takai, Yamada and Ito (1994)
Biochem. Biophys. Res. Commun. 201, 894-901] because the reported geno
mic clone was chimaeric. Furthermore our study provides evidence that
the 3' untranslated region of the H1 receptor mRNA is much longer than
previously accepted. Together, these findings provide a complete view
of the structure of the human histamine H1 receptor gene. Both the co
ding region of the H1 receptor gene and its promoter region were indep
endently mapped to chromosome 3p25.