Sn. Rodin et S. Ohno, 4 PRIMORDIAL MODES OF TRANSFER-RNA-SYNTHETASE RECOGNITION, DETERMINEDBY THE (G,C) OPERATIONAL CODE, Proceedings of the National Academy of Sciences of the United Statesof America, 94(10), 1997, pp. 5183-5188
In distinction to single-stranded anticodons built of G, C, A, and U b
ases, their presumable double-stranded precursors at the first three p
ositions of the acceptor stem are composed almost invariably of G-C an
d C-G base pairs. Thus, the ''second'' operational RNA code responsibl
e for correct aminoacylation seems to be a (G,C) code preceding the cl
assic genetic code, Although historically rooted, the two codes were d
estined to diverge quite early. However, closer inspection revealed th
at two complementary catalytic domains of class I and class II aminoac
yl-tRNA synthetases (aaRSs) multiplied by two, also complementary, G2-
C71 and C2-G71 targets in tRNA accepters, yield four (2 x 2) different
modes of recognition, It appears therefore that the core four-column
organization of the genetic code, associated with the most conservativ
e central base of anticodons and codons, was in essence predetermined
by these four recognition modes of the (G,C) operational code, The gen
eral conclusion follows that the genetic code per se looks like a ''fr
ozen accident'' but only beyond the ''2 x 2 = 4'' scope, The four prim
ordial modes of tRNA-aaRS recognition are amenable to direct experimen
tal verification.