We have determined the primary sequence of the 5' noncoding region (5'
/NCR) and putative helicase regions (NS-3) of hepatitis G virus (HGV)
and GB virus C (GBV-C) that were isolated in Japan from suspected case
s of nonA-nonB and/or nonA-nonB-nonC viral hepatitis by using RT-PCR,
and we compared the newly isolated sequences with three established is
olates. The addition of a ''G'' residue was found at the 5' terminus o
f all 8 Japanese isolates. These isolates were more clearly distinguis
hed from the prototype viruses by comparison with the 5' NCR sequence
than by comparison with the NS-3 region. Our results suggested that at
least three distinct genomic variants of HGV exist. Genotyping of HGV
by using RT-PCR based on the sequence of the 5' NCR seems highly feas
ible.