L. Glais et al., RFLP MAPPING OF THE WHOLE GENOME OF 10 VIRAL ISOLATES REPRESENTATIVE OF DIFFERENT BIOLOGICAL GROUPS OF POTATO-VIRUS-Y, Archives of virology, 143(11), 1998, pp. 2077-2091
Ten PVY isolates representative of four PVY groups (Y-N, Y-NTN, Y-N-W,
Y-O), differing by their ability to induce reactions of vein necrosis
on tobacco and tuber necrosis on potato, were studied in order to res
earch the regions of the viral genome involved in these necrosis pheno
mena. The whole genome of these isolates was amplified in two fragment
s (4 063 and 5 670 nucleotides) and was subjected to a restriction fra
gment length polymorphism (RFLP) study. In the first 4 063 nucleotides
of the PVY genome, a phenetic analysis of RFLP data resulted in a clu
stering of our PVY isolates into three groups: PVYN isolates (group A)
; PVYNTN and PVYN-W isolates (group B) and PVYO isolates (group C). In
the last 5 670 nucleotides, two groups were found: PVYN and PVYNTN is
olates (group D) and PVYO and PVYN-W isolates (group E). From this clu
stering and the necrosing properties known for these isolates, the tob
acco necrosis determinants seem more likely located in the 5' than in
the 3' half part of the viral RNA, whereas it would be the opposite si
tuation for the determinants of the necrosis on potato tubers. Moreove
r a recombination event seemed to have occurred in the genome of the P
VYN-W isolates.