The hormonal precursor pro-ocytocin-neurophysin is activated by select
ive cleavage at Arg12-Ala13, producing mature ocytocin and neurophysin
, To understand the cleavage mechanism better, and in particular the r
ecognition of the cleavage site, it is necessary to characterize the t
hree-dimensional structure of the precursor molecule. Here we combine
a variety of experimental data with molecular modeling and dynamics ca
lculations to derive possible precursor conformations, In the models o
btained, the N-terminus of the precursor, corresponding to the ocytoci
n segment, is hydrogen bonded in a pocket of the neurophysin moiety in
a similar manner to a crystallographically obtained non-covalent comp
lex between the two molecules. The calculations suggest that although
the ocytocin segment is relatively flexible, it adopts a stable, broad
loop structure in the vicinity of the cleavage region, which may cons
titute the structural element recognized by the cleaving enzyme, The c
alculations also suggest a possible widening of the distance between t
he two neurophysin domains in the precursor relative to that in the no
n-covalent neurophysin-ocytocin complex.