A. Kramer et al., STEPWISE TRANSFORMATION OF A CHOLERA-TOXIN AND A P24 (HIV-1) EPITOPE INTO D-PEPTIDE ANALOGS, Protein engineering (Print), 11(10), 1998, pp. 941-948
We have transformed two peptide epitopes into D-peptide analogs: VPGSQ
HIDS derived from cholera toxin recognized by the antibody TE33, and G
ATPQDLNTML from the HIV-1 capsid protein p24 recognized by the antibod
y CB4-1, The transformation process was performed by stepwise substitu
tion of each single epitope position by all 19 D-amino acids and glyci
ne followed by antibody binding studies and selection of one D-analog
for further transformation. Thus, each transformation step introduced
one novel D-position into the peptide. For both epitopes complete D-an
alogs were obtained. The cholera toxin-derived variant dwGsqhydp binds
to the antibody TE33 with higher affinity than its original epitope,
whereas in the case of the p24-derived analog saGdwwGkssl lower affini
ty was detected. Both D-peptides are completely stable in;serum for se
veral days. Antibody interaction models for both D-molecules were gene
rated by computer-assisted modelling based on the crystal structures o
f the starting complexes. Compared with the L-peptides, the binding co
nformation of dwGsqhydp is very similar, whereas saGdwwGkssl displays
a completely different interaction mode.