B. Beck et al., ENHANCED 3D-DATABASES - A FULLY ELECTROSTATIC DATABASE OF AM1-OPTIMIZED STRUCTURES, Journal of chemical information and computer sciences, 38(6), 1998, pp. 1214-1217
Citations number
29
Categorie Soggetti
Computer Science Interdisciplinary Applications","Computer Science Information Systems","Computer Science Interdisciplinary Applications",Chemistry,"Computer Science Information Systems
In a feasibility study, a single conformation 3D version of the Maybri
dge database (53 471 compounds) has been produced using geometries opt
imized with AM1 semiempirical MO-theory. The database entries include
full electrostatic information within the NAO-PC model and can be used
to generate spectroscopic and physical properties using established Q
SPR models. The data were generated from the original database using c
ustom cleanup software to remove database inconsistencies and, for ins
tance, to isolate the ''interesting'' ion of ion pairs, 2D to 3D conve
rsion using CORINA and subsequent geometry optimization using VAMP. Th
e complete geometry optimization run was carried out in less than 15 h
elapsed time on a Silicon Graphics Origin 2000 with 126 processors. T
he total failure rate for the structure cleanup, 2D to 3D conversion,
and geometry optimization steps was around 1%.