METALATED NUCLEOBASE QUARTETS - DIMERIZATION OF A METAL-MODIFIED GUANINE, CYTOSINE PAIR OF TRANS-(NH3)(2)PT-II AND FORMATION OF CH-CENTER-DOT-CENTER-DOT-CENTER-DOT-N HYDROGEN-BONDS
Rko. Sigel et al., METALATED NUCLEOBASE QUARTETS - DIMERIZATION OF A METAL-MODIFIED GUANINE, CYTOSINE PAIR OF TRANS-(NH3)(2)PT-II AND FORMATION OF CH-CENTER-DOT-CENTER-DOT-CENTER-DOT-N HYDROGEN-BONDS, Journal of the American Chemical Society, 120(46), 1998, pp. 12000-12007
The X-ray crystal structures of two complexes of the composition trans
-[Ft(NH3)(2)(9-EtG-N7)(1-MeC-N3')]X . nH(2)O (1) with 9-EtG = 9-ethylg
uaninate and 1-MeC = 1-methylcytosine are reported. 1b (X picrate, n =
1) crystallizes to produce a dimetalated base quartet, held together
by H-bonding interactions between pairs of cations. This feature essen
tially corresponds to the solution structure previously proposed by us
on the basis of H-1 NMR and ESI-MS, with a H-bonding interaction betw
een the aromatic H5' proton of 1-MeC and the deprotonated N1 position
of 9-EtG. 1c (X = trifluoromethanesulfonate, n = 0) crystallizes in a
radically different fashion as a consequence of nucleobase rotation ab
out the Pt-N bond, leading to a reversed Hoogsteen arrangement without
any intracomplex H bonding between the two bases. In the solid-state
structure of 1b short intermolecular H bonds exist between the exocycl
ic NH2 group of 1-MeC and 06 of 9-EtG (2.715(7) Angstrom). Considerabl
y lon er intra- (N4'(1-MeC)... 06(9-EtG), 3.229(6) Angstrom) and inter
molecular (C5'(1-MeC)... N1(9-EtC), 3.548(7) Angstrom) H bonds are pri
marily a consequence of considerable base twisting, presumably caused
by stacking between the guanine residues and the picrate anions. In DM
SO-d(6) solution, the cyclic base quartet structure is favored, regard
less of the nature of the anion X (X = picrate, trifluoromethanesulfon
ate, perchlorate, nitrate). An association constant K-D = 44.1 +/- 3.2
M-1 for the dimerization has been determined.