Analysis of the evolution, localization and biologic function of papain fam
ily cysteine proteases in metazoan and protozoan parasites has provided imp
ortant and often surprising insights into the biochemistry and cellular fun
ction of this diverse enzyme family. Furthermore, the relative lack of redu
ndancy of cysteine proteases in parasites compared to their mammalian hosts
makes them attractive targets for the development of new antiparasitic che
motherapy. The treatment of experimental models of parasitic diseases with
cysteine protease inhibitors has provided an important 'proof of concept' f
or the use of cysteine protease inhibitors in vivo. Evidence has now accumu
lated that cysteine protease inhibitors can selectively arrest replication
of a microbial pathogen without untoward toxicity to the host. Furthermore,
this can be achieved with reasonable dosing schedules and oral administrat
ion of the drug. Initial studies have confirmed the efficacy of cysteine pr
otease inhibitors in treatment of Trypanosoma cruzi, Plasmodium falciparum
and Leishmania major. Work on Trypanosoma brucei, the agent of African tryp
anosomiasis, is preliminary but also promising. Target validation studies h
ave shown that biotinylated or radiolabeled irreversible inhibitors specifi
cally bind to the cysteine protease targets thought to represent the major
activity within the parasite. Tn the case of T. cruzi, the effect of inhibi
tors appears to be predominantly in blocking protease processing. Transfect
ion studies using variant constructs have supported this model. Finally, th
e generation of null mutants for the multiple protease genes in Leishmania
mexicana has provided the first genetic support for the key role of this en
zyme family in parasite virulence. Safety studies in rodents and analysis o
f uptake of inhibitors by parasites and host cells suggest that the selecti
vity of inhibitors for the parasite targets may reside in the lack of redun
dancy of parasite proteases, the higher concentration of host proteases in
intracellular compartments, and differential uptake of inhibitors by parasi
tes. Attempts to elicit resistance to cysteine protease inhibitors in paras
ite cultures suggest that mechanisms of induced resistance are independent
of resistance to the traditional antiparasitic agents. This suggests that c
ysteine protease inhibitors may provide an alternative to traditional thera
py in drug-resistant organisms. (C) 1999 Elsevier Science Ltd. All rights r
eserved.