Objectives: To support already established epidemiological links betwe
en inmates of Glenochil prison positive for HIV infection by using mol
ecular techniques and thus provide evidence of the extent of acquisiti
on during a recent outbreak of the disease resulting from needle shari
ng. To identify possible sources of the outbreak, and to demonstrate t
he ability of the methodology to make further links beyond the origina
l outbreak. Design: Viral sequences obtained from the blood of HIV pos
itive prisoners previously identified by standard epidemiological meth
ods were compared with each other and with sequences from other Scotti
sh patients. Setting: Glenochil prison for men, central Scotland. Subj
ects: Adults inmates and their possible contacts. Results: Phylogeneti
c analysis of viral sequences in two different genomic regions showed
that 13 of the 14 HIV positive prisoners had been infected from a comm
on source. Previous research had shown that six of these had acquired
their infection in Glenochil; molecular evidence suggests taht more th
an double this number were infected while incarcerated. Virus from two
long term HIV positive patients who were in the prison at the time of
the outbreak but who were not identified in the original or subsequen
t surveys was sufficiently different to make it unlikely that they wer
e the source, A viral sequence from heterosexual transmission from one
inmate showed the ability of these techniques to follow the infection
through different routes of infection. Conclusion: The number of pris
oners infected with HIV during the 1993 outbreak within Glenochil pris
on was more than twice that previously shown. This shows the potential
for tile spread of bloodborne diseases within prisons bg injecting dr
ugs.