Thermoplasma acidophilum cell extracts were fractionated by gel filtra
tion. Proteasomes were eluted as two major peaks. The first one (molec
ular mass(r) about 2 MDa) contained proteasomes associated with DNA/pr
otein protein complexes. Proteasomes eluted in the other peak were par
tially resolved into three subpeaks and based on their preferential hy
drolysis of casein, Z-GGL-MCA, and suc-LLVY-MCA, were designated C, L,
and Y, respectively. Further purification of proteasomes from peak Y
resulted in a homogenous enzyme preparation, whereas proteasomes purif
ied from peak C contained a homomultimeric protein composed of 20 kDa
subunits. Thus, association of proteasomes with this protein seems to
be responsible for the observed increase in molecular mass and for inh
ibition of caseinolytic activity by Ca2+-ions.