The human Major Histocompatibility Complex (MHC) shares similarities with t
hree other chromosome regions in human. This could be the vestige of ancest
ral large scale duplications. We discuss here the possibility i) that these
duplications occurred during two rounds of tetraploidization supposed to h
ave taken place during chordate evolution before the jawed vertebrate radia
tion, and ii) that one of the quadruplicate regions, relaxed of functional
constraints, gave rise to the vertebrate MHC by a quick round of gene cir-d
uplication and cis-exon shuffling. These different rounds of cis-duplicatio
ns and exon shufflings allowed the emergence of new genes participating in
novel biological functions i.e. adaptive immune responses. Cis-duplications
and cis-exon shufflings are ongoing processes in the evolution of some of
these genes in this region as they have occurred and were fixed at differen
t times and in different lineages during vertebrate evolution. In contrast,
other genes within the MHC have remained stable since the emergence of jaw
ed vertebrates.