Because major histocompatibility complex (MHC) genes play a major role in t
he development of acquired immune responses, it is essential to obtain comp
arative information on their organisation, expression and possible function
al dichotomies in different species. In human, three classical, polymorphic
class I genes (HLA-A, B- and -C) and four expressed A/B class II gene pair
s (HLA-DM, -DP, -DQ and -DR) are each present on all haplotypes. With the e
xception of the HLA-DRB loci, it has been assumed that a similar rigid orga
nisational situation exists in other mammalian species. However, extensive
analysis of the bovine MHC (BoLA) at both the genomic and transcriptional l
evels has revealed a degree of genetic fluidity not described in other spec
ies. None of the four (or more) classical class I genes identified is consi
stently expressed, and haplotypes differ from one another in both the numbe
r and composition of expressed class I genes. Similarly, in the class II re
gion, the number of DQ genes varies between haplotypes in both number and c
omposition. These variations in both class I and II (which appear to reflec
t differences at the genomic level) are Likely to play an important role in
cattle immune responses. The observed phenotypic differences in cattle dem
onstrate very clearly the dynamic nature of the MHC region. This review add
resses the functional impact of such variation in different breeds and popu
lations, and its significance in terms of MHC evolution.