Molecular characterization of waxy mutations in wheat

To date, few mutations in wheat have been characterized at the molecular le vel. In this study, the mutations in the three waxy alleles in waxy wheat ( Wx-Alb, Wx-Blb and Wx-Dlb) were characterized, and waxy gene expression was compared in several wheat lines, including hexaploid and tetraploid waxy l ines of wheat. Southern analysis showed that the Wx-Blb allele had sustaine d a deletion which included the entire coding region of the Wx-Bl gene. DNA homologous to waxy gene sequences was still present in the Wx-Alb and Wx-D lb alleles of the hexaploid waxy mutant. Transcripts of waxy alleles were a lso detected in both hexaploid and tetraploid mutants at 10 days post-anthe sis. but the transcript level was dramatically reduced compared to that fou nd in non-waxy lines. Isolation of cDNAs showed that transcripts were produ ced by both the Wx-Alb and Wx-Dlb alleles. A 23-bp deletion sustained by th e Wx-Alb allele at an exon-intron junction results in the use of a cryptic splice site during mRNA processing. The deduced translation product encoded by the Wx-Alb cDNA lacks 39 amino acids, including the putative ADP-glucos e binding site and a portion of the transit peptide. The C-terminal region of the deduced protein encoded by the Wx-Dlb cDNA lacks the last 30 amino a cids. Comparison of the genomic sequences of the null and wild-type Wx-Dl a lleles indicated that 588 bp were deleted in the Wx-Dlb mutation, and that the last 261 bp of the Wx-Dlb cDNA originated from the normally non-transcr ibed 3' flanking region. Like several deletion mutations characterized in o ther plant species, both Wx-Alb and Wx-Dlb alleles contain small DNA insert ions, or filler DNA, between the deletion end-points.