With very few exceptions, data assimilation methods which have been used or
proposed for use with ocean models have been based on some assumption of l
inearity or near-linearity. The great majority of these schemes have at the
ir root some least-squares assumption. While one can always perform least-s
quares analysis on any problem, direct application of least squares may not
yield satisfactory results in cases in which the underlying distributions
are significantly non-Gaussian. In many cases in which the behavior of the
system is governed by intrinsically nonlinear dynamics, distributions of so
lutions which are initially Gaussian will not remain so as the system evolv
es. The presence of noise is an additional and inevitable complicating fact
or. Besides the imperfections in our models which result From physical or c
omputational simplifying assumptions, there is uncertainty in forcing field
s such as wind stress and heat flux which will remain with us for the fores
eeable future. The real world is a noisy place, and the effects of noise up
on highly nonlinear systems can be complex. We therefore consider the probl
em of data assimilation into systems modeled as nonlinear stochastic differ
ential equations. When the models are described in this way, the general as
similation problem becomes that of estimating the probability density funct
ion of the system conditioned on the observations. The quantity we choose a
s the solution to the problem can be a mean, a median, a mode, or some othe
r statistic. In the fully general formulation, no assumptions about moments
or near-linearity are required. We present a series of simulation experime
nts in which we demonstrate assimilation of data into simple nonlinear mode
ls in which least-squares methods such as the (Extended) Kalman filter or t
he weak-constraint variational methods will not perform well. We illustrate
the basic method with three examples: a simple one-dimensional nonlinear s
tochastic differential equation, the well known three-dimensional Lorenz mo
del and a nonlinear quasigeostrophic channel model. Comparisons to the exte
nded Kalman filter and an extension to the extended Kalman filter are prese
nted.