Compared with our understanding of the electrophysiological correlates of s
leep and wakefulness, the search for correlates at the molecular level is s
till in its infancy. However, the evidence obtained so far supports the hyp
othesis that reliable molecular correlates do exist. As will be summarized
in this review levels of receptor binding, second messengers and protein ph
osphorylation differ between sleep and wakefulness. Moreover, compelling da
ta obtained in different animal species suggest that the transition between
sleep and wakefulness is accompanied by significant changes in gene expres
sion. Many immediate early genes, transcription factors, plasticity-related
genes and mitochondrial genes are expressed at higher levels in wakefulnes
s than in sleep, while a few still unknown genes are up-regulated during sl
eep. The ongoing systematic screening of gene expression across behavioural
states should prove crucial in elucidating the regulatory mechanisms of sl
eep homeostasis and the functions of sleep.