Structural analysis of silk with C-13 NMR chemical shift contour plots

The polymorphic structures of silk fibroins in the solid state were examine d on the basis of a quantitative relationship between the C-13 chemical shi ft and local structure in proteins. To determine this relationship,C-13 che mical shift contour plots for C alpha and C beta carbons of Ala and Ser res idues, and the C alpha chemical shift plot for Gly residues were prepared u sing atomic co-ordinates from the Protein Data Bank and C-13 NMR chemical s hift data in aqueous solution reported for 40 proteins. The C-13 CP/MAS NMR chemical shifts of Ala, Ser and Gly residues of Bombyx mori silk fibroin i n silk I and silk II forms were used along with C-13 CP/MAS NMR chemical sh ifts of Ala residues of Samia cynthia ricini silk fibroin in beta-sheet and alpha-helix forms for the structure analyses of silk fibroins. The allowed regions in the C-13 chemical shift contour plots for C alpha and C beta ca rbons of Ala and Ser residues for the structures in silk fibroins, i.e. Sil k II, Silk I and alpha-helix, were determined using their C-13 isotropic NM R chemical shifts in the solid state. There are two area of the phi,Psi map which satisfy the observed Silk I chemical shift data for both the C alpha and C beta carbons of Ala and Ser residues in the C-13 chemical shift cont our plots. (C) 1999 Elsevier Science B.V. All rights reserved.