There are now four well-established methods to examine the chromosomes
of filamentous fungi: mapping genes to linkage groups by recombinatio
n analyses, light-microscopic observation of chromosomes in meiotic di
visions, electron-microscopic observation of the synaptonemal complexe
s between homologous chromosomes in prophase of meiosis, and separatio
n of chromosomes as individual bands by pulsed field gel electrophores
is. These techniques and their contributions are described in brief wi
th special reference to Neurospora. A fifth technique will be used mor
e and more in characterizing chromosomes at the molecular level as DNA
sequencing is completed for a limited number of the fungi. However, o
nly the molecular studies of chromosome structures as they relate to c
entromeres, telomeres or nucleolus organizer regions are discussed, as
is the potential usefulness of DNA sequencing to identify the junctio
ns of chromosome rearrangements.