The DNA sequence of the second hypervariable region of the mitochondrial co
ntrol region of the Neandertal type specimen, found in 1856 in central Euro
pe, has been determined from 92 clones derived from eight overlapping ampli
fications performed from four independent extracts. When the reconstructed
sequence is analyzed together with the previously determined DNA sequence f
rom the first hypervariable region, the Neandertal mtDNA is found to fall o
utside a phylogenetic tree relating the mtDNAs of contemporary humans. The
date of divergence between the mtDNAs of the Neandertal and contemporary hu
mans is estimated to 465,000 years before the present, with confidence limi
ts of 317,000 and 741,000 years, Taken together, the results support the co
ncept that the Neandertal mtDNA evolved separately from that of modern huma
ns for a substantial amount of time and lends no support to the idea that t
hey contributed mtDNA to contemporary modern humans.