Antibodies to double-stranded DNA (dsDNA) are a defining feature of Systemi
c Lupus Erythematosus (SLE). The molecular characterization of anti-dsDNA a
utoantibodies reveals that they are actively selected for binding to antige
n. Evidence for antigen selection includes the use of suitable rearrangemen
t products, the switching of IgM isotype to IgG, and the acquisition of som
atic mutations that raise the affinity for dsDNA. Through a process of spec
ificity maturation, anti-dsDNA antibodies can arise from anti-single strand
ed DNA (ssDNA) antibodies that also occur in nonautoimmune individuals. To
clarify circumstances leading to the initiation of systemic autoimmunity, w
e compare features of immune responses to nucleic acids that operate before
and after disease develops. Evidence indicating that anti-dsDNA antibodies
bind with DNA sequence preference is highlighted to propose that sequence-
specific anti-dsDNA antibodies may be induced by an infectious agent and in
turn may extend the response to endogenous nuclear antigens. Thus, sequenc
e-specific anti-dsDNA B cells may provide an important stimulus to break th
e tolerance to self.