It is generally accepted that marine bacteria utilize labile, recently prod
uced components of bulk dissolved organic matter. This interpretation is ba
sed largely on indirect measurements using model compounds and plankton-der
ived organic matter. Here, we present an assessment of the relative proport
ions of modem and older dissolved organic carbon (DOC) utilized by marine b
acteria. Bacterial nucleic acids were collected from both estuarine (Santa
Rosa Sound, FL) and open-ocean (eastern North Pacific) sites, and the natur
al radiocarbon signatures of the nucleic acid carbon in both systems were d
etermined. Bacterial nucleic acids from Santa Rosa Sound were significantly
enriched in radiocarbon with respect to the bulk DOC and were similar to t
he radiocarbon signature of atmospheric CO2 at the time of sampling, indica
ting that these bacteria exclusively assimilate a modem component of the es
tuarine bulk DOG. In contrast, bacterial nucleic acids from the oceanic sit
e were enriched in C-14 relative to the bulk DOC but depleted in C-14 with
respect to modem surface dissolved inorganic carbon (DIC) and suspended par
ticulate organic carbon (POCsusp). This suggests that open-ocean bacteria a
ssimilate both modem and older components of DOG. The distinct radiocarbon
signatures of the nucleic acids at these two sites (i.e., +120 +/- 17% estu
arine vs. -34 +/- 24% oceanic) demonstrate that natural C-14 abundance meas
urements of bacterial biomarkers are a powerful tool for investigations of
carbon cycling through microbial communities in different aquatic systems.