Rs. Dewitte et al., SMOG - DE-NOVO DESIGN METHOD BASED ON SIMPLE, FAST, AND ACCURATE FREE-ENERGY ESTIMATES .2. CASE-STUDIES IN MOLECULAR DESIGN, Journal of the American Chemical Society, 119(20), 1997, pp. 4608-4617
In this paper, we summarize three ligand design studies performed usin
g the program SMoG, which was developed in our lab. The aim of this pr
esentation is to communicate through examples the potential of this me
thod: the richness of the molecules that can be developed and the ease
with which they are found. In particular, we present suggestions for
ligands to Src SH3 domain (specificity pocket and LP site) and CD4.