Ae. Carlsson, Simplified calculation of folding energies and residue coordination numbers in random heteropolymers, PHYS REV E, 59(5), 1999, pp. 5995-6000
I develop a formalism for calculating effective pair and higher-order inter
actions between residues in random heteropolymers that approximately predic
t the folding enthalpy and the coordination numbers of individual residues.
In a simple model heteropolymer with additive couplings between residues,
the folding enthalpy is written in terms of two-, three-, and four-body int
eractions between residues. The coordination numbers are expressed in terms
of interactions between up to three residues. Application to a 6X6 square
model shows that the folding enthalpy is obtained to an accuracy of better
than 1%. The coordination numbers are obtained with a rms error of 1.2 neig
hbors. [S1063-651X(99)15905-1].