Simplified calculation of folding energies and residue coordination numbers in random heteropolymers

Authors
Citation
Ae. Carlsson, Simplified calculation of folding energies and residue coordination numbers in random heteropolymers, PHYS REV E, 59(5), 1999, pp. 5995-6000
Citations number
15
Categorie Soggetti
Physics
Journal title
PHYSICAL REVIEW E
ISSN journal
1063651X → ACNP
Volume
59
Issue
5
Year of publication
1999
Part
B
Pages
5995 - 6000
Database
ISI
SICI code
1063-651X(199905)59:5<5995:SCOFEA>2.0.ZU;2-T
Abstract
I develop a formalism for calculating effective pair and higher-order inter actions between residues in random heteropolymers that approximately predic t the folding enthalpy and the coordination numbers of individual residues. In a simple model heteropolymer with additive couplings between residues, the folding enthalpy is written in terms of two-, three-, and four-body int eractions between residues. The coordination numbers are expressed in terms of interactions between up to three residues. Application to a 6X6 square model shows that the folding enthalpy is obtained to an accuracy of better than 1%. The coordination numbers are obtained with a rms error of 1.2 neig hbors. [S1063-651X(99)15905-1].