To increase the sensitivity with which time-resolved Fourier transform infr
ared (FT-IR) difference spectra are measured, the detector is often AC-coup
led. Thus, the measured interferograms correspond to spectra with both posi
tive and negative intensities. The presence of signed intensities presents
problems for the standard Mertz and Forman phase correction methods. The Me
rtz Signed phase correction method was designed to handle signed intensitie
s, but the smoothing inherent in calculating the phase angles at reduced re
solution introduces other errors in AC-coupled spectra produced with this a
lgorithm. These errors are evident as signal remaining along the imaginary
axis after phase correction. A new approach to phase correction, the Double
d-Angle method, can directly correct the phases of transient AC-coupled spe
ctra without the need for a DC interferogram [M.S. Hutson, M.S. Braiman, Ap
pl. Spectrosc. 52 (1998) 974]. When this method was applied to the transien
t AC interferograms measured after photolysis of bacteriorhodopsin, the sig
nal was fully rotated onto the real axis following phase correction. Here,
we show that the Doubled-Angle method can be applied to time-resolved diffe
rence FT-IR spectra of halorhodopsin, a more demanding biological system du
e to its intrinsically small differential absorption signals. (C) 1999 Else
vier Science B.V. All rights reserved.