Based on the concept of Green Chemistry, a new procedure of finding bioacti
ve compounds and their synthetic routes by computer-aided techniques was pr
oposed. The procedure consists of pharmacophore search against a 3D structu
ral database of natural products for lead discovery and computer-aided synt
hesis design for avoiding unuseful synthetic experiments. This work demonst
rated that computer aided drug design and synthesis design would help us to
make the consideration of environmental concerns systematically, rather th
an having to deal later with the unnecessary waste chemicals. Thus, it is s
hown that chemical computer-aided design (CAD) is an indispensable part of
Green Chemistry.